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- Proteins & Proteomes
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- Systems Biology
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- Database
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- Software tool
STRING
Protein-protein interaction networks and enrichment analysis
EpitopeXtractor
- Glycomics
- Software tool
Glycan structures submitted to EpitopeXtractor are compared to the complete collection of glycan determinants stored in the Glydin' network. The tool extracts all matching substructures and displays them as Symbol Nomenclature for Glycans (SNFG) cartoons with the option of mapping the results on the Glydin' network. EpitopeXtractor outputs glycan binding motifs for glycan structures.
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- Glycomics
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- Software tool
Glydin'
Network representation of known glycan determinants-
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- Proteins & Proteomes
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- Database
UniProtKB/Swiss-Prot
Protein knowledgebase-
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- Proteins & Proteomes
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- Database
UniProtKB
Protein sequence database-
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- Proteins & Proteomes
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- Lipidomics
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- Database
SwissLipids
Knowledge resource for lipids-
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- Systems Biology
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Rhea
Expert-curated database of biochemical reactions-
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- Proteins & Proteomes
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- Database
ENZYME
Enzyme nomenclature database-
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- Proteins & Proteomes
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- Database
UniProt SPARQL endpoint
SPARQL access to UniProt and related data-
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- Proteins & Proteomes
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- Systems Biology
- , Metabolomics
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- Database
Rhea SPARQL endpoint
SPARQL access to the Rhea knowledgebase-
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- Systems Biology
- , Glycomics
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- Software tool
HMO-Glycologue
Simulator of Human Milk Oligosaccharide synthesis-
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- Proteins & Proteomes
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- Lipidomics
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- Database
SwissLipids SPARQL endpoint
SPARQL access to the SwissLipids knowledgebase-
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- Proteins & Proteomes
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- Systems Biology
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- Database
STRING SPARQL endpoint
SPARQL access to the STRING knowledgebase-
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- Systems Biology
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- Software tool
OMAMO
OMAMO allows the user to find the best simple model organism-
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- Glycomics
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- Database
UniCarb-DB
Glycan structures and associated mass spectrometry data-
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- Proteins & Proteomes
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- Glycomics
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- Software tool
Swiss Mass Abacus
Intuitive calculator of peptide and glycopeptide masses-
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- Glycomics
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- Software tool
SugarSketcher
Fast, intuitive, SNFG-compliant glycan structure drawing-
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- Glycomics
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- Database
SugarBind
Pathogen Sugar-Binding Database-
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- Glycomics
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- Software tool
GlyS3
Match a glycan substructure to a database of full structures-
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- Glycomics
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- Software tool
Glynsight
Visualise and compare glycan expression profiles-
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- Proteins & Proteomes
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- Glycomics
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- Software tool
GlycoSiteAlign
Multiple alignment of sequences around glycosylation sites-
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- Proteins & Proteomes
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- Glycomics
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- Database
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- Software tool
GlyConnect
Integrated data platform to study glycosylation-
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- Glycomics
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- Software tool
GlycoDigest
In silico digestion of glycans by exoglycosidases-
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- Proteins & Proteomes
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- Glycomics
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- Software tool
GlycoMod
Possible oligosaccharide structures on proteins from masses-
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- Glycomics
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- Software tool
GlyConnect Compozitor
Contextualises glycan composition sets-
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- Proteins & Proteomes
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- Glycomics
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- Database
Glyco@Expasy
Zooming in on web-based glycoinformatics resources-
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- Proteins & Proteomes
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- Glycomics
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- Database
GlyConnect SPARQL endpoint
SPARQL access to GlyConnect-
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- Glycomics
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- Database
GAG-DB
3D structures of glycosaminoglycans-
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- Proteins & Proteomes
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- Glycomics
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- Software tool
MzJava
Open source Java class library to process MS fragmentation-
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- Proteins & Proteomes
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- Glycomics
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- Database
UniLectin
Structural and functional classification of lectins-
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- Metabolomics
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- Software tool
MSight
Mass Spectrometry Imager-